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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
22
ATAC-seq
Assay category
61
DNA binding
22
DNA accessibility
Target of assay
46
histone modification
45
histone
37
narrow histone mark
15
transcription factor
8
broad histone mark
1
RNA binding protein
Date released
27
May, 2020
20
May, 2022
17
August, 2021
12
August, 2017
6
October, 2019
1
February, 2021
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
83
Homo sapiens
Biosample type
64
tissue
15
cell line
4
primary cell
Organ
123
pancreas
83
liver
79
kidney
76
brain
75
epithelium
57
heart
50
blood vessel
50
connective tissue
50
vasculature
49
artery
27
eye
14
embryo
13
musculature of body
8
bone element
8
limb
8
skeleton
4
adipose tissue
1
nerve
1
pituitary gland
1
spleen
Project
83
AMP
Genome assembly (visualization)
83
hg19
41
GRCh38
Lab
49
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
44
20
cell line
HepG2
14
1
primary cell
hepatocyte
3
Liver fetal (hepatocyte)
1
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