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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
22
ATAC-seq
2
DNase-seq
Assay category
49
DNA binding
24
DNA accessibility
Target of assay
38
histone
38
histone modification
33
narrow histone mark
11
transcription factor
5
broad histone mark
1
RNA binding protein
Date released
27
May, 2020
20
May, 2022
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
681
bam
622
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
73
Homo sapiens
Biosample type
52
tissue
15
cell line
6
primary cell
Organ
189
brain
183
kidney
151
heart
129
vasculature
127
blood vessel
92
limb
74
artery
74
epithelium
73
liver
69
pancreas
60
musculature of body
33
eye
27
nerve
23
connective tissue
18
ureter
13
vein
8
bone element
8
skeleton
4
adipose tissue
1
pituitary gland
Project
73
AMP
Genome assembly (visualization)
73
hg19
31
GRCh38
Lab
39
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
fastq
BIOSAMPLE
ASSAY
73 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
tissue
liver
32
20
cell line
HepG2
14
1
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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