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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
423
ChIP-seq
23
ATAC-seq
7
DNase-seq
1
FAIRE-seq
Assay category
423
DNA binding
31
DNA accessibility
Target of assay
329
transcription factor
91
histone modification
90
histone
81
recombinant protein
56
RNA binding protein
56
narrow histone mark
34
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
19
October, 2019
18
August, 2017
17
August, 2021
2
June, 2019
1
February, 2021
Available data
701
bam
637
bigWig
465
fastq
454
bed narrowPeak
371
bigBed narrowPeak
174
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
15
bed bed3+
4
hic
4
tar
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
454
Homo sapiens
Biosample type
308
cell line
113
tissue
19
primary cell
14
in vitro differentiated cells
Organ
441
liver
214
pancreas
203
brain
183
kidney
151
epithelium
151
heart
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
454
AMP
Genome assembly (visualization)
450
hg19
379
GRCh38
Lab
420
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
454 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
307
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
primary cell
endothelial cell of umbilical vein
10
2
1
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
14
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