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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
21
ATAC-seq
1
DNase-seq
Assay category
104
DNA binding
22
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
RNA binding protein
3
chromatin remodeller
Date released
39
August, 2017
32
December, 2017
25
August, 2021
16
February, 2018
5
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
285
bam
253
bigWig
135
fastq
131
tsv
126
bed narrowPeak
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
126
Homo sapiens
Biosample type
923
tissue
341
cell line
285
primary cell
126
in vitro differentiated cells
2
stem cell
Organ
41
connective tissue
16
epithelium
14
embryo
12
liver
2
pancreas
Project
126
AMP
Genome assembly (visualization)
125
hg19
122
GRCh38
Lab
122
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
17
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
38
1
1
neural progenitor cell
13
10
hepatocyte
12
pancreatic endoderm
12
definitive endodermal cell
6
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