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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
21
ATAC-seq
1
DNase-seq
Assay category
107
DNA binding
22
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
chromatin remodeller
Date released
41
August, 2017
33
December, 2017
25
August, 2021
16
February, 2018
5
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
288
bam
256
bigWig
138
fastq
131
tsv
129
bed narrowPeak
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
129
Homo sapiens
Biosample type
942
tissue
374
cell line
294
primary cell
129
in vitro differentiated cells
2
stem cell
Organ
43
connective tissue
17
epithelium
14
embryo
13
liver
2
pancreas
Project
129
AMP
Genome assembly (visualization)
128
hg19
125
GRCh38
Lab
125
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
15
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
40
1
1
neural progenitor cell
13
10
hepatocyte
13
pancreatic endoderm
12
definitive endodermal cell
6
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