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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ATAC-seq
23
DNase-seq
4
ChIP-seq
Assay category
122
DNA accessibility
4
DNA binding
Target of assay
53
histone
histone modification
37
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
64
August, 2021
35
February, 2023
23
June, 2019
2
November, 2017
2
November, 2018
Available data
348
fastq
336
bam
198
tsv
157
txt
153
zippedFastqFolder
126
bed narrowPeak
66
tagAlign
64
xls
61
bigWig
27
bigBed narrowPeak
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
126
Homo sapiens
Biosample type
115
tissue
7
primary cell
4
cell line
Organ
71
kidney
38
heart
36
blood vessel
36
vasculature
35
artery
10
brain
6
epithelium
4
liver
2
pancreas
1
connective tissue
Project
126
AMP
Genome assembly (visualization)
840
GRCh38
hg19
Lab
64
Katalin Susztak, Upenn
62
AMP-T2D consortium
target.investigated_as!
histone modification
assembly!
hg19
BIOSAMPLE
ASSAY
126 results
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ATAC-seq
DNase-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
body of pancreas
2
heart
2
Ammon's horn
1
+ See 11 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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