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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
pCHi-C
Assay category
13
3D chromatin structure
Date released
9
March, 2020
3
October, 2019
1
August, 2021
Available data
2702
bam
2506
bigWig
1563
bed narrowPeak
1153
tsv
951
bigBed narrowPeak
886
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
242
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
hic
13
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
7
tissue
4
in vitro differentiated cells
1
cell line
1
primary cell
Organ
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
vein
Project
13
AMP
Genome assembly (visualization)
13
hg19
Lab
12
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
assay_title!
pCHi-C
organ_slims!
pancreas
BIOSAMPLE
ASSAY
13 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
primary cell
endothelial cell of umbilical vein
1
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