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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
14
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
1
August, 2021
1
November, 2019
1
October, 2019
Available data
2824
bigWig
2798
bam
1535
bed narrowPeak
1267
tsv
999
fastq
939
bigBed narrowPeak
294
bed broadPeak
258
bigBed broadPeak
244
bed bed3+
235
tagAlign
17
bed bedMethyl
17
bigBed bedMethyl
17
hic
14
bedpe bed3+
12
bed bed3
6
bed bedgraph
5
hdf5
4
tar
3
cool
3
txt
1
bedpe
1
tagAlign bed3+
Organism
14
Homo sapiens
Biosample type
9
tissue
4
primary cell
1
cell line
Organ
5
pancreas
4
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
vein
Project
11
AMP
3
HPAP
Genome assembly (visualization)
14
hg19
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
3
audit script error
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
14 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
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