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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
Hi-C
1
pCHi-C
Assay category
11
3D chromatin structure
Date released
7
March, 2020
2
August, 2021
1
August, 2018
1
November, 2019
1
October, 2019
Available data
2616
bam
2362
bigWig
1444
bed narrowPeak
1197
tsv
945
fastq
932
bigBed narrowPeak
295
tagAlign
272
bed broadPeak
235
bigBed broadPeak
233
bed bed3+
76
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
12
bedpe bed3+
12
hic
11
bed bed3
6
bed bedgraph
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
10
tissue
primary cell
1
cell line
1
in vitro differentiated cells
Organ
3
heart
3
pancreas
2
liver
2
musculature of body
1
adipose tissue
1
blood vessel
1
connective tissue
1
vasculature
Project
12
AMP
Genome assembly (visualization)
10
hg19
Lab
10
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
12 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
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