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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
8
single cell RNA-seq
1
pCHi-C
Assay category
15
3D chromatin structure
8
Transcription
Date released
8
March, 2020
6
February, 2021
3
October, 2022
2
August, 2021
1
August, 2018
1
November, 2018
1
November, 2019
1
October, 2019
1
September, 2018
Available data
3180
bam
2937
bigWig
1714
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
24
Homo sapiens
Biosample type
16
tissue
6
primary cell
1
cell line
1
in vitro differentiated cells
Organ
6
pancreas
5
kidney
4
epithelium
3
heart
3
liver
2
blood vessel
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
21
AMP
3
HPAP
Genome assembly (visualization)
14
hg19
Lab
19
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
8
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
24 results
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Hi-C
single cell RNA-seq
pCHi-C
tissue
kidney
5
islet of Langerhans
2
liver
1
1
psoas muscle
2
aorta
1
+ See 4 more…
primary cell
pancreatic cell
2
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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