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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
5
Hi-C
4
DNase-seq
2
pCHi-C
Assay category
20
DNA binding
5
3D chromatin structure
4
DNA accessibility
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
22
June, 2019
4
March, 2020
2
May, 2019
2
October, 2019
1
November, 2019
Available data
212
bam
192
bigWig
150
tsv
85
txt
63
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
31
Homo sapiens
Biosample type
23
primary cell
6
in vitro differentiated cells
1
cell line
1
tissue
Organ
10
connective tissue
8
musculature of body
6
epithelium
5
kidney
4
heart
1
limb
1
pancreas
1
vasculature
Project
31
AMP
Genome assembly (visualization)
31
hg19
24
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
31
inconsistent ontology term
28
inconsistent control
3
audit script error
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
Hi-C
DNase-seq
pCHi-C
primary cell
skeletal muscle satellite cell
7
mesenchymal stem cell
6
cardiac fibroblast
3
1
epithelial cell of proximal tubule
2
1
kidney epithelial cell
2
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
cell line
EndoC_BH1
1
tissue
muscle of leg
1
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