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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
3
pCHi-C
Assay category
14
3D chromatin structure
Date released
10
March, 2020
3
October, 2019
2
November, 2019
1
August, 2018
1
August, 2021
Available data
2114
bam
1905
bigWig
1161
tsv
1047
bed narrowPeak
577
bigBed narrowPeak
484
fastq
229
bed bed3+
216
tagAlign
212
bed broadPeak
175
bigBed broadPeak
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
5
csv
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
Organism
17
Homo sapiens
Biosample type
9
tissue
7
in vitro differentiated cells
primary cell
1
cell line
Organ
4
pancreas
3
heart
liver
2
musculature of body
1
adipose tissue
1
blood vessel
1
connective tissue
1
epithelium
1
vasculature
Project
17
AMP
Genome assembly (visualization)
15
hg19
Lab
16
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
biosample_type!
primary cell
organ_slims!
liver
BIOSAMPLE
ASSAY
17 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
See all biosamples
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