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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
28
ChIP-seq
20
Hi-C
2
pCHi-C
Assay category
195
DNA accessibility
28
DNA binding
20
3D chromatin structure
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
187
June, 2019
20
August, 2017
12
March, 2020
12
October, 2019
6
November, 2017
3
October, 2022
2
August, 2021
2
November, 2019
1
November, 2020
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
245
Homo sapiens
Biosample type
203
tissue
33
primary cell
6
in vitro differentiated cells
3
cell line
Organ
78
kidney
48
musculature of body
36
brain
36
limb
33
heart
23
epithelium
18
pancreas
18
ureter
15
vasculature
13
blood vessel
8
connective tissue
5
vein
4
artery
4
eye
4
liver
2
adipose tissue
2
nerve
Project
242
AMP
3
HPAP
Genome assembly (visualization)
221
hg19
200
GRCh38
Lab
240
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
11
inconsistent ontology term
3
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
245 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
tissue
heart
18
1
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 45 more…
primary cell
endothelial cell of umbilical vein
2
2
1
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 20 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
cell line
EndoC_BH1
1
HepG2
1
Panc1
1
See all biosamples
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