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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
4
DNase-seq
2
ATAC-seq
2
pCHi-C
Assay category
6
DNA accessibility
5
3D chromatin structure
Date released
4
June, 2019
4
March, 2020
2
February, 2023
2
October, 2019
1
November, 2019
Available data
212
bam
192
bigWig
150
tsv
85
txt
63
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
13
Homo sapiens
Biosample type
8
in vitro differentiated cells
3
primary cell
1
cell line
1
tissue
Organ
3
connective tissue
2
epithelium
1
heart
1
kidney
1
limb
1
musculature of body
1
pancreas
1
vasculature
Project
13
AMP
Genome assembly (visualization)
13
hg19
4
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
13 results
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Hi-C
DNase-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
immature adipocyte
2
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
primary cell
cardiac fibroblast
1
epithelial cell of proximal tubule
1
smooth muscle cell of the brain vasculature
1
cell line
EndoC_BH1
1
tissue
muscle of leg
1
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