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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
Hi-C
12
ATAC-seq
3
pCHi-C
Assay category
12
DNA accessibility
Date released
10
February, 2023
2
February, 2021
2
March, 2020
1
August, 2018
Available data
3392
bam
3124
bigWig
1777
bed narrowPeak
1600
tsv
1357
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
4
tar
3
bedpe bed3+
2
ibed
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
8
in vitro differentiated cells
5
tissue
1
cell line
1
primary cell
Organ
7
connective tissue
4
bone element
4
skeleton
1
adipose tissue
1
brain
1
liver
Project
15
AMP
Genome assembly (visualization)
14
hg19
2
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
assay_title!
Hi-C
BIOSAMPLE
ASSAY
15 results
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Clear Filters
ATAC-seq
pCHi-C
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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