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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
Hi-C
12
ATAC-seq
3
pCHi-C
Assay category
18
3D chromatin structure
12
DNA accessibility
Date released
12
March, 2020
10
February, 2023
3
October, 2019
3
October, 2022
August, 2021
2
February, 2021
2
November, 2019
1
August, 2018
Available data
3343
bam
3082
bigWig
1671
bed narrowPeak
1477
tsv
1358
fastq
1042
bigBed narrowPeak
374
tagAlign
322
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
33
Homo sapiens
Biosample type
14
tissue
12
in vitro differentiated cells
5
primary cell
2
cell line
Organ
7
connective tissue
6
pancreas
5
epithelium
4
bone element
4
skeleton
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
brain
1
vein
Project
30
AMP
3
HPAP
Genome assembly (visualization)
32
hg19
2
GRCh38
Lab
30
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
3
audit script error
1
inconsistent replicate
month_released!
August, 2021
BIOSAMPLE
ASSAY
33 results
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Hi-C
ATAC-seq
pCHi-C
tissue
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
heart
1
+ See 8 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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