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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
10
Hi-C
1
pCHi-C
Assay category
12
DNA accessibility
10
3D chromatin structure
Date released
March, 2020
10
February, 2023
3
October, 2019
3
October, 2022
2
August, 2021
2
February, 2021
2
November, 2019
1
August, 2018
Available data
3376
bam
3109
bigWig
1774
bed narrowPeak
1555
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
13
hic
12
bed bed3
11
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
23
Homo sapiens
Biosample type
8
in vitro differentiated cells
8
tissue
4
primary cell
3
cell line
Organ
7
connective tissue
6
pancreas
4
bone element
4
epithelium
4
skeleton
2
liver
1
adipose tissue
1
brain
1
heart
Project
20
AMP
3
HPAP
Genome assembly (visualization)
21
hg19
2
GRCh38
Lab
18
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
3
inconsistent ontology term
1
inconsistent replicate
month_released!
March, 2020
BIOSAMPLE
ASSAY
23 results
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ATAC-seq
Hi-C
pCHi-C
in vitro differentiated cells
chondrocyte
5
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
tissue
islet of Langerhans
2
acetabular part of hip bone
1
brain
1
heart
1
ilium
1
+ See 2 more…
primary cell
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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