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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
39
ATAC-seq
29
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
226
DNA binding
69
DNA accessibility
4
3D chromatin structure
Target of assay
216
histone
216
histone modification
112
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
47
June, 2019
46
September, 2018
33
August, 2017
21
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
3
October, 2022
2
November, 2020
1
February, 2021
1
March, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
299
Homo sapiens
Biosample type
954
tissue
406
cell line
299
primary cell
139
in vitro differentiated cells
2
stem cell
Organ
110
epithelium
71
pancreas
22
kidney
22
vasculature
18
blood vessel
17
connective tissue
14
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
212
AMP
84
T1D
3
HPAP
Genome assembly (visualization)
292
hg19
261
GRCh38
Lab
182
AMP-T2D consortium
114
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
25
inconsistent ontology term
3
audit script error
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
299 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
1
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