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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
RRBS
4
Hi-C
Assay category
10
DNA methylation
4
3D chromatin structure
Date released
9
July, 2019
3
October, 2022
1
August, 2017
1
March, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
14
Homo sapiens
Biosample type
35
tissue
14
primary cell
7
in vitro differentiated cells
3
cell line
Organ
10
epithelium
3
kidney
3
pancreas
2
vasculature
1
blood vessel
1
brain
1
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
1
vein
Project
11
AMP
3
HPAP
Genome assembly (visualization)
14
hg19
Lab
11
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
14 results
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RRBS
Hi-C
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
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