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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
ATAC-seq
59
total RNA-seq
20
Hi-C
13
single cell RNA-seq
3
pCHi-C
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
68
DNA accessibility
20
3D chromatin structure
Date released
123
August, 2021
89
February, 2021
12
March, 2020
7
February, 2023
7
May, 2022
4
October, 2022
3
October, 2019
2
November, 2019
1
August, 2018
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
247
Homo sapiens
Biosample type
231
tissue
10
in vitro differentiated cells
4
primary cell
3
cell line
Organ
126
kidney
88
bone element
13
pancreas
5
epithelium
4
skeleton
3
heart
3
musculature of body
2
blood vessel
2
liver
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
245
AMP
3
HPAP
Genome assembly (visualization)
64
GRCh38
25
hg19
Lab
121
Katalin Susztak, Upenn
113
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
Audit category:
92
inconsistent ontology term
9
audit script error
BIOSAMPLE
ASSAY
248 results
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RNA microarray
ATAC-seq
total RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
MPRA
snATAC-seq
tissue
kidney
64
49
13
bone element
84
islet of Langerhans
6
2
psoas muscle
2
acetabular part of hip bone
1
+ See 10 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
MIN6
1
See all biosamples
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