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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
Hi-C
3
pCHi-C
Assay category
8
3D chromatin structure
Date released
5
March, 2020
3
October, 2022
2
October, 2019
1
August, 2018
Available data
903
bam
875
bigWig
554
fastq
429
bed narrowPeak
405
tsv
153
zippedFastqFolder
140
tagAlign
126
bigBed narrowPeak
65
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
0
xls
Organism
11
Homo sapiens
Biosample type
tissue
7
in vitro differentiated cells
4
primary cell
cell line
Organ
4
epithelium
3
pancreas
1
adipose tissue
1
blood vessel
1
connective tissue
1
vasculature
1
vein
Project
8
AMP
3
HPAP
Genome assembly (visualization)
10
hg19
Lab
8
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
3
audit script error
biosample_type!
cell line
tissue
BIOSAMPLE
ASSAY
11 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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