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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
17
Hi-C
3
pCHi-C
Assay category
64
DNA accessibility
17
3D chromatin structure
Date released
66
August, 2021
12
March, 2020
October, 2019
3
October, 2022
2
November, 2019
1
August, 2018
Available data
3142
bam
2922
bigWig
1588
bed narrowPeak
1584
tsv
1358
fastq
972
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
265
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
84
Homo sapiens
Biosample type
73
tissue
5
in vitro differentiated cells
4
primary cell
2
cell line
Organ
64
kidney
7
pancreas
5
epithelium
2
blood vessel
2
heart
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
81
AMP
3
HPAP
Genome assembly (visualization)
64
GRCh38
18
hg19
Lab
64
Katalin Susztak, Upenn
15
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
3
audit script error
month_released!
October, 2019
BIOSAMPLE
ASSAY
84 results
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ATAC-seq
Hi-C
pCHi-C
tissue
kidney
64
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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