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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
1
pCHi-C
Assay category
7
3D chromatin structure
Date released
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
August, 2018
Available data
2767
bam
2496
bigWig
1479
bed narrowPeak
1285
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
11
bed bed3
8
bedpe bed3+
8
hic
7
bed bedgraph
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
3
in vitro differentiated cells
primary cell
3
tissue
2
cell line
Organ
3
pancreas
1
adipose tissue
1
connective tissue
1
epithelium
1
heart
1
liver
Project
8
AMP
Genome assembly (visualization)
6
hg19
Lab
6
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
month_released!
March, 2020
biosample_type!
primary cell
BIOSAMPLE
ASSAY
8 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
tissue
islet of Langerhans
2
heart
1
cell line
EndoC_BH1
1
HepG2
1
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