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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
1
pCHi-C
Assay category
6
3D chromatin structure
Date released
March, 2020
2
August, 2021
2
November, 2019
2
October, 2019
1
August, 2018
Available data
2570
bam
2324
bigWig
1334
bed narrowPeak
1126
tsv
949
fastq
845
bigBed narrowPeak
292
tagAlign
246
bed broadPeak
209
bed bed3+
209
bigBed broadPeak
161
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
bed bed3
7
bed bedgraph
7
bedpe bed3+
7
hic
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
primary cell
2
cell line
2
tissue
Organ
3
pancreas
1
adipose tissue
1
connective tissue
1
epithelium
heart
1
liver
Project
7
AMP
Genome assembly (visualization)
5
hg19
Lab
5
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
month_released!
March, 2020
biosample_type!
primary cell
organ_slims!
heart
BIOSAMPLE
ASSAY
7 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
tissue
islet of Langerhans
2
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