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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
3
ChIP-seq
FAIRE-seq
1
pCHi-C
Assay category
10
3D chromatin structure
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
March, 2020
3
November, 2017
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
Available data
3371
bam
3144
bigWig
1809
bed narrowPeak
1555
tsv
1356
fastq
1037
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
13
hic
12
bed bed3
11
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
5
cell line
3
in vitro differentiated cells
3
primary cell
3
tissue
Organ
6
pancreas
4
epithelium
4
liver
1
adipose tissue
1
connective tissue
1
heart
Project
11
AMP
3
HPAP
Genome assembly (visualization)
12
hg19
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
3
inconsistent ontology term
month_released!
March, 2020
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
14 results
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Clear Filters
Hi-C
ChIP-seq
pCHi-C
cell line
HepG2
1
3
EndoC_BH1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
heart
1
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