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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
Hi-C
1
pCHi-C
Assay category
9
3D chromatin structure
Date released
March, 2020
3
October, 2019
3
October, 2022
2
November, 2019
1
August, 2018
1
August, 2021
Available data
2696
bam
2488
bigWig
1383
tsv
1333
bed narrowPeak
893
fastq
684
bigBed narrowPeak
312
tagAlign
260
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
12
hic
11
bed bed3
10
bedpe bed3+
7
bed bedgraph
7
csv
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
10
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
3
tissue
1
cell line
Organ
6
pancreas
4
epithelium
1
adipose tissue
1
connective tissue
1
heart
liver
Project
7
AMP
3
HPAP
Genome assembly (visualization)
8
hg19
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
3
inconsistent ontology term
month_released!
March, 2020
organ_slims!
liver
BIOSAMPLE
ASSAY
10 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
heart
1
cell line
EndoC_BH1
1
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