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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
50
ChIP-seq
13
Hi-C
4
ATAC-seq
4
pCHi-C
2
Capture-C
1
snATAC-seq
Assay category
177
DNA accessibility
50
DNA binding
13
3D chromatin structure
Target of assay
22
histone
22
histone modification
19
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
163
June, 2019
33
August, 2017
15
December, 2017
11
March, 2020
9
November, 2018
October, 2019
4
August, 2021
4
February, 2023
2
November, 2019
2
September, 2017
1
August, 2018
1
February, 2021
1
May, 2022
Available data
2564
bam
2372
bigWig
1354
bed narrowPeak
1316
tsv
949
fastq
876
bigBed narrowPeak
268
bed broadPeak
249
tagAlign
231
bigBed broadPeak
230
bed bed3+
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
16
bedpe bed3+
14
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
vcf
Organism
246
Homo sapiens
Biosample type
210
tissue
primary cell
30
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
35
musculature of body
32
limb
31
pancreas
29
heart
27
brain
20
connective tissue
18
ureter
9
liver
7
adipose tissue
4
blood vessel
4
vasculature
3
embryo
3
eye
2
artery
1
epithelium
1
spleen
Project
246
AMP
Genome assembly (visualization)
228
hg19
222
GRCh38
Lab
242
AMP-T2D consortium
2
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
month_released!
October, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
246 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
pCHi-C
Capture-C
snATAC-seq
tissue
islet of Langerhans
21
2
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 6 more…
cell line
HepG2
1
1
EndoC_BH1
1
stem cell
hESC
3
See all biosamples
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