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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
3
pCHi-C
Assay category
13
3D chromatin structure
Date released
9
March, 2020
2
August, 2021
2
November, 2019
2
October, 2019
1
August, 2018
Available data
2584
bam
2342
bigWig
1337
bed narrowPeak
1166
tsv
949
fastq
845
bigBed narrowPeak
292
tagAlign
246
bed broadPeak
209
bed bed3+
209
bigBed broadPeak
161
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
16
bedpe bed3+
14
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
7
in vitro differentiated cells
7
tissue
primary cell
2
cell line
Organ
4
pancreas
heart
2
liver
2
musculature of body
1
adipose tissue
1
blood vessel
1
connective tissue
1
epithelium
1
vasculature
Project
16
AMP
Genome assembly (visualization)
14
hg19
Lab
14
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
organ_slims!
heart
biosample_type!
primary cell
BIOSAMPLE
ASSAY
16 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
liver
1
pancreas
1
cell line
EndoC_BH1
1
HepG2
1
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