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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
total RNA-seq
70
single cell RNA-seq
6
WGBS
5
Hi-C
1
ATAC-seq
1
RNA microarray
Assay category
148
Transcription
6
DNA methylation
5
3D chromatin structure
1
DNA accessibility
Date released
33
April, 2018
33
July, 2018
32
February, 2021
26
September, 2018
6
December, 2019
6
May, 2021
5
July, 2019
4
March, 2020
3
August, 2018
3
October, 2019
3
October, 2022
2
February, 2023
2
November, 2019
2
October, 2018
1
June, 2018
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
161
Homo sapiens
Biosample type
120
primary cell
36
cell line
3
tissue
2
in vitro differentiated cells
Organ
479
connective tissue
424
pancreas
402
adipose tissue
176
liver
171
heart
161
epithelium
70
blood vessel
70
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
150
AMP
9
HPAP
2
T1D
Genome assembly (visualization)
152
hg19
146
GRCh38
Lab
152
AMP-T2D consortium
9
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
single cell RNA-seq
WGBS
Hi-C
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell
10
12
6
1
pancreatic beta cell
10
12
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 12 more…
cell line
EndoC_BH1
33
1
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
2
renal glomerulus
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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