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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
7
Hi-C
Assay category
7
3D chromatin structure
7
DNA accessibility
Date released
4
June, 2019
3
October, 2022
2
November, 2018
2
November, 2019
1
August, 2021
1
March, 2020
1
October, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
14
Homo sapiens
Biosample type
9
tissue
3
primary cell
2
cell line
Organ
78
kidney
65
liver
38
brain
36
limb
35
musculature of body
33
heart
27
epithelium
19
vasculature
18
ureter
15
blood vessel
14
pancreas
10
connective tissue
5
vein
4
artery
4
eye
3
adipose tissue
2
nerve
1
spleen
Project
11
AMP
3
HPAP
Genome assembly (visualization)
11
hg19
7
GRCh38
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
14 results
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Clear Filters
DNase-seq
Hi-C
tissue
body of pancreas
4
pancreas
2
1
islet of Langerhans
2
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
Panc1
1
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