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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
795
ChIP-seq
209
DNase-seq
27
ATAC-seq
20
Hi-C
5
FAIRE-seq
3
pCHi-C
Assay category
795
DNA binding
241
DNA accessibility
20
3D chromatin structure
Target of assay
405
transcription factor
385
histone
385
histone modification
238
broad histone mark
147
narrow histone mark
93
RNA binding protein
81
recombinant protein
34
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
73
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
36
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
12
March, 2020
6
October, 2017
5
September, 2017
3
October, 2022
2
August, 2021
2
July, 2019
2
November, 2019
1
August, 2018
1
November, 2020
Available data
3385
bam
3163
bigWig
1811
bed narrowPeak
1600
tsv
1351
fastq
1036
bigBed narrowPeak
391
tagAlign
316
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1059
Homo sapiens
Biosample type
565
tissue
357
cell line
113
primary cell
24
in vitro differentiated cells
Organ
360
liver
127
brain
104
kidney
97
heart
92
pancreas
85
vasculature
84
limb
81
blood vessel
81
epithelium
54
blood
54
bodily fluid
49
musculature of body
29
connective tissue
26
nerve
25
artery
18
ureter
14
vein
13
spleen
11
adipose tissue
6
eye
Project
1056
AMP
3
HPAP
Genome assembly (visualization)
992
GRCh38
978
hg19
Lab
1054
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
31
inconsistent ontology term
28
inconsistent control
3
audit script error
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
BIOSAMPLE
ASSAY
1059 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
liver
38
2
1
heart left ventricle
28
3
1
kidney
18
13
1
body of pancreas
26
4
heart
7
18
1
+ See 54 more…
cell line
HepG2
293
1
GM12878
54
Panc1
6
1
EndoC_BH1
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
1
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
skeletal muscle satellite cell
7
+ See 24 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
+ See 1 more…
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