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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
RRBS
6
Hi-C
Assay category
7
DNA methylation
6
3D chromatin structure
Date released
6
July, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
October, 2019
Available data
585
bigWig
578
bam
409
fastq
273
bed narrowPeak
264
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
13
Homo sapiens
Biosample type
34
tissue
13
primary cell
4
in vitro differentiated cells
3
cell line
Organ
11
epithelium
kidney
3
pancreas
3
vasculature
2
blood vessel
2
vein
1
brain
1
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
Project
9
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
12
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
1
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
13 results
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RRBS
Hi-C
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
chondrocytes
1
choroid plexus epithelial cell
1
hepatocyte
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
See all biosamples
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