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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
129
Transcription
1
DNA accessibility
Date released
79
May, 2021
22
February, 2021
15
February, 2018
7
August, 2021
4
March, 2020
2
December, 2019
2
October, 2019
1
August, 2017
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
132
Homo sapiens
Biosample type
1252
tissue
319
primary cell
178
cell line
132
in vitro differentiated cells
4
stem cell
Organ
6
connective tissue
6
embryo
2
epithelium
1
heart
Project
132
AMP
Genome assembly (visualization)
128
GRCh38
128
hg19
Lab
132
AMP-T2D consortium
Audit category:
90
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
neural progenitor cell
7
cardiomyocytes (cardiac muscle cell)
3
1
2
adipocyte
4
1
pancreatic endoderm
4
embryonic stem cell
2
1
definitive endodermal cell
2
endocrine cell
2
posterior foregut
2
primitive gut cell
2
cardiac fibroblast
1
endothelial cell
1
hematopoietic multipotent progenitor cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
lymphocyte of B lineage (iPSC)
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
smooth muscle cell
1
stem cell
1
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