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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
4
Hi-C
2
ATAC-seq
1
DNase-seq
Assay category
7
DNA binding
4
3D chromatin structure
3
DNA accessibility
Target of assay
12
histone
12
histone modification
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
7
December, 2017
4
October, 2019
2
March, 2020
1
August, 2017
Available data
254
bam
222
bigWig
131
tsv
110
fastq
95
bed narrowPeak
26
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
14
Homo sapiens
Biosample type
368
tissue
347
cell line
94
primary cell
14
in vitro differentiated cells
Organ
7
epithelium
7
liver
3
connective tissue
Project
14
AMP
Genome assembly (visualization)
14
hg19
8
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
Hi-C
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte
7
adipocyte
2
1
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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