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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
DNase-seq
4
WGBS
2
ATAC-seq
2
RRBS
Assay category
12
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
12
August, 2017
6
November, 2018
4
June, 2019
2
July, 2019
1
March, 2019
1
October, 2017
Available data
626
bam
567
bigWig
471
fastq
383
tsv
193
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
19
tagAlign
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
6
txt
3
cool
1
bedpe
Organism
20
Homo sapiens
Biosample type
26
tissue
cell line
Organ
82
kidney
50
musculature of body
49
brain
38
heart
37
limb
28
epithelium
26
pancreas
19
vasculature
18
ureter
14
blood vessel
13
connective tissue
7
liver
5
adipose tissue
5
eye
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
26
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
24
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
biosample_type!
cell line
BIOSAMPLE
ASSAY
26 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
RRBS
tissue
pancreas
6
2
2
1
islet of Langerhans
6
2
1
body of pancreas
4
2
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