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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
WGBS
13
RRBS
12
ATAC-seq
8
single cell RNA-seq
Assay category
30
DNA methylation
12
DNA accessibility
8
Transcription
Date released
17
July, 2019
10
February, 2023
8
February, 2021
8
November, 2018
6
August, 2017
1
September, 2018
Available data
3075
bam
2868
bigWig
1666
bed narrowPeak
1444
tsv
1101
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
263
bigBed broadPeak
252
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
50
Homo sapiens
Biosample type
36
tissue
7
primary cell
5
in vitro differentiated cells
2
cell line
Organ
9
connective tissue
9
kidney
8
heart
epithelium
6
pancreas
5
liver
4
bone element
4
musculature of body
4
skeleton
3
brain
2
adipose tissue
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
50
AMP
Genome assembly (visualization)
25
hg19
19
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
5
audit script error
1
inconsistent ontology term
1
inconsistent replicate
organ_slims!
epithelium
BIOSAMPLE
ASSAY
50 results
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Clear Filters
WGBS
RRBS
ATAC-seq
single cell RNA-seq
tissue
kidney
1
5
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
+ See 15 more…
primary cell
pancreatic cell
2
cardiac fibroblast
1
cardiac muscle cell
1
osteoblast
1
skeletal muscle cell
1
+ See 1 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
1
See all biosamples
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