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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
19
RRBS
17
WGBS
Assay category
36
DNA methylation
19
DNA accessibility
Date released
23
July, 2019
13
February, 2023
7
November, 2018
6
August, 2017
6
February, 2021
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
55
Homo sapiens
Biosample type
30
tissue
12
in vitro differentiated cells
11
primary cell
2
cell line
Organ
13
connective tissue
8
heart
6
epithelium
6
pancreas
4
bone element
4
kidney
4
liver
4
musculature of body
4
skeleton
3
brain
2
adipose tissue
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
55
AMP
Genome assembly (visualization)
38
hg19
19
GRCh38
Lab
52
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
55 results
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ATAC-seq
RRBS
WGBS
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
brain
1
1
+ See 15 more…
in vitro differentiated cells
chondrocyte
5
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
cell line
HepG2
1
1
See all biosamples
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