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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
Hi-C
19
RRBS
17
WGBS
7
ATAC-seq
3
pCHi-C
Assay category
36
DNA methylation
20
3D chromatin structure
7
DNA accessibility
Date released
23
July, 2019
12
March, 2020
7
November, 2018
6
August, 2017
4
February, 2021
3
February, 2023
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
66
Homo sapiens
Biosample type
35
tissue
14
in vitro differentiated cells
14
primary cell
3
cell line
Organ
13
pancreas
11
epithelium
11
heart
8
connective tissue
6
musculature of body
5
liver
4
kidney
4
vasculature
3
adipose tissue
3
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
63
AMP
3
HPAP
Genome assembly (visualization)
47
hg19
17
GRCh38
Lab
58
AMP-T2D consortium
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
66 results
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Hi-C
RRBS
WGBS
ATAC-seq
pCHi-C
tissue
heart left ventricle
1
1
2
pancreas
1
1
2
heart right ventricle
1
2
islet of Langerhans
2
1
adipose tissue
2
+ See 12 more…
in vitro differentiated cells
adipocyte
4
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
+ See 9 more…
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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