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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
75
ChIP-seq
15
RRBS
15
WGBS
2
ATAC-seq
Assay category
206
DNA accessibility
75
DNA binding
30
DNA methylation
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
August, 2017
23
July, 2019
16
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3110
bam
2857
bigWig
1635
bed narrowPeak
1511
tsv
1071
fastq
1000
bigBed narrowPeak
313
tagAlign
281
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
311
Homo sapiens
Biosample type
207
tissue
60
cell line
44
primary cell
Organ
82
kidney
65
liver
49
brain
38
heart
37
limb
35
musculature of body
28
epithelium
19
vasculature
18
ureter
15
pancreas
14
blood vessel
9
connective tissue
5
eye
4
artery
4
vein
3
spleen
2
adipose tissue
2
nerve
1
pericardium
Project
311
AMP
Genome assembly (visualization)
278
GRCh38
272
hg19
Lab
309
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
311 results
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Clear Filters
DNase-seq
ChIP-seq
RRBS
WGBS
ATAC-seq
tissue
heart
18
1
brain
14
3
1
muscle of arm
17
kidney
13
1
muscle of leg
13
1
+ See 46 more…
cell line
HepG2
58
1
Panc1
1
primary cell
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
+ See 17 more…
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