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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
ChIP-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
392
DNA binding
12
DNA accessibility
1
DNA methylation
Target of assay
352
transcription factor
88
recombinant protein
63
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
57
November, 2018
27
December, 2018
15
January, 2019
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
405
Homo sapiens
Biosample type
1009
tissue
405
cell line
305
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
309
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
403
AMP
2
T1D
Genome assembly (visualization)
400
hg19
359
GRCh38
Lab
391
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
405 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
307
1
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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