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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
78
ChIP-seq
19
RRBS
17
WGBS
Assay category
205
DNA accessibility
78
DNA binding
36
DNA methylation
Target of assay
49
transcription factor
29
histone
29
histone modification
15
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
23
July, 2019
19
August, 2017
16
November, 2018
9
October, 2019
1
November, 2020
Available data
3098
bam
2906
bigWig
1682
bed narrowPeak
1469
tsv
1214
fastq
1022
bigBed narrowPeak
356
tagAlign
319
bed broadPeak
283
bigBed broadPeak
247
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
319
Homo sapiens
Biosample type
201
tissue
60
cell line
58
primary cell
in vitro differentiated cells
Organ
82
kidney
66
liver
40
brain
38
heart
37
limb
37
musculature of body
28
epithelium
19
vasculature
18
ureter
14
blood vessel
13
pancreas
11
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
319
AMP
Genome assembly (visualization)
282
GRCh38
279
hg19
Lab
319
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
13
inconsistent control read length
inconsistent assembly
biosample_type!
in vitro differentiated cells
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
319 results
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DNase-seq
ChIP-seq
RRBS
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 45 more…
cell line
HepG2
58
1
Panc1
1
primary cell
skeletal muscle myoblast
1
12
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
+ See 18 more…
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