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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
57
ChIP-seq
19
RRBS
17
WGBS
Assay category
205
DNA accessibility
57
DNA binding
36
DNA methylation
Target of assay
49
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
187
June, 2019
53
November, 2017
23
July, 2019
16
November, 2018
9
August, 2017
9
October, 2019
1
November, 2020
Available data
3101
bam
2910
bigWig
1685
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
298
Homo sapiens
Biosample type
201
tissue
49
cell line
48
primary cell
in vitro differentiated cells
Organ
82
kidney
55
liver
40
brain
38
heart
37
limb
37
musculature of body
28
epithelium
19
vasculature
18
ureter
14
blood vessel
13
pancreas
11
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
298
AMP
Genome assembly (visualization)
263
GRCh38
258
hg19
Lab
298
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
2
inconsistent control read length
biosample_type!
in vitro differentiated cells
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
298 results
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DNase-seq
ChIP-seq
RRBS
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 45 more…
cell line
HepG2
47
1
Panc1
1
primary cell
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
skeletal muscle myoblast
1
2
1
astrocyte of the cerebellum
1
2
+ See 18 more…
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