Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
79
ChIP-seq
9
WGBS
4
RRBS
Assay category
205
DNA accessibility
79
DNA binding
13
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
July, 2019
20
August, 2017
16
November, 2018
9
October, 2019
1
November, 2020
Available data
3019
bam
2825
bigWig
1678
bed narrowPeak
1404
tsv
1217
fastq
1023
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
244
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
19
hic
16
bedpe bed3+
13
bed bedMethyl
13
bigBed bedMethyl
8
csv
7
bed bed3
4
tar
3
cool
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
297
Homo sapiens
Biosample type
187
tissue
60
cell line
50
primary cell
in vitro differentiated cells
Organ
78
kidney
65
liver
38
brain
36
limb
35
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
11
pancreas
10
connective tissue
4
adipose tissue
4
artery
4
eye
4
vein
3
spleen
2
nerve
Project
297
AMP
Genome assembly (visualization)
275
GRCh38
265
hg19
Lab
297
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
July, 2019
BIOSAMPLE
ASSAY
297 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
WGBS
RRBS
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 41 more…
cell line
HepG2
58
1
Panc1
1
primary cell
skeletal muscle myoblast
1
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
See all biosamples
Download