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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
6
DNase-seq
1
RRBS
Assay category
6
DNA accessibility
6
DNA binding
1
DNA methylation
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
4
June, 2019
4
November, 2017
4
October, 2019
1
July, 2019
Available data
32
bam
29
bigWig
21
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
13
Homo sapiens
Biosample type
13
primary cell
6
tissue
Organ
28
epithelium
13
kidney
13
vasculature
12
brain
8
blood vessel
7
connective tissue
4
heart
4
vein
3
liver
2
eye
2
musculature of body
Project
13
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
DNase-seq
RRBS
primary cell
choroid plexus epithelial cell
2
1
1
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
2
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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