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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
21
ChIP-seq
10
RRBS
Assay category
28
DNA accessibility
21
DNA binding
10
DNA methylation
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
15
August, 2017
9
July, 2019
6
November, 2017
4
October, 2019
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
59
Homo sapiens
Biosample type
201
tissue
60
cell line
59
primary cell
1
in vitro differentiated cells
Organ
28
epithelium
13
kidney
13
vasculature
12
brain
8
blood vessel
7
connective tissue
4
heart
4
vein
3
liver
2
eye
2
musculature of body
Project
59
AMP
Genome assembly (visualization)
52
hg19
45
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
59 results
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DNase-seq
ChIP-seq
RRBS
primary cell
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
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