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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
4
RRBS
2
DNase-seq
2
WGBS
Assay category
13
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
169
June, 2019
64
November, 2017
23
July, 2019
21
August, 2017
16
November, 2018
9
October, 2019
1
November, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
21
Homo sapiens
Biosample type
15
primary cell
5
tissue
1
in vitro differentiated cells
Organ
3
connective tissue
2
adipose tissue
2
musculature of body
1
liver
Project
21
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent assembly
organ_slims!
ureter
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
RRBS
DNase-seq
WGBS
primary cell
skeletal muscle myoblast
13
1
1
tissue
adipose tissue
2
skeletal muscle tissue
2
liver
1
in vitro differentiated cells
adipocyte
1
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