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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
DNase-seq
75
ChIP-seq
19
RRBS
16
WGBS
Assay category
179
DNA accessibility
75
DNA binding
35
DNA methylation
Target of assay
48
transcription factor
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
164
June, 2019
62
November, 2017
22
July, 2019
21
August, 2017
16
November, 2018
3
October, 2019
1
November, 2020
Available data
3194
bam
3001
bigWig
1670
bed narrowPeak
1532
tsv
1355
fastq
945
bigBed narrowPeak
392
tagAlign
291
bed broadPeak
254
bigBed broadPeak
244
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
289
Homo sapiens
Biosample type
177
tissue
60
cell line
51
primary cell
1
in vitro differentiated cells
Organ
82
kidney
66
liver
40
brain
38
heart
37
limb
37
musculature of body
28
epithelium
19
vasculature
ureter
blood vessel
13
pancreas
12
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
289
AMP
Genome assembly (visualization)
254
GRCh38
251
hg19
Lab
289
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
ureter
blood vessel
BIOSAMPLE
ASSAY
289 results
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DNase-seq
ChIP-seq
RRBS
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 38 more…
cell line
HepG2
58
1
Panc1
1
primary cell
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
astrocyte of the cerebellum
1
2
cardiac muscle cell
1
1
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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