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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
20
Hi-C
19
RRBS
3
pCHi-C
Assay category
77
DNA methylation
60
DNA accessibility
52
Transcription
20
3D chromatin structure
Date released
134
May, 2022
23
July, 2019
19
September, 2020
12
March, 2020
7
November, 2018
6
August, 2017
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
212
Homo sapiens
Biosample type
167
primary cell
35
tissue
7
in vitro differentiated cells
3
cell line
Organ
93
pancreas
91
epithelium
11
heart
6
musculature of body
5
liver
4
connective tissue
4
kidney
4
vasculature
3
adipose tissue
3
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
156
HPAP
56
AMP
Genome assembly (visualization)
40
hg19
17
GRCh38
Lab
156
Klaus Kaestner, Upenn
54
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
212 results
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WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
RRBS
pCHi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
cardiac fibroblast
1
+ See 10 more…
tissue
heart left ventricle
2
1
1
pancreas
2
1
1
heart right ventricle
2
1
islet of Langerhans
2
1
adipose tissue
2
+ See 12 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
1
EndoC_BH1
1
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