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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
single cell RNA-seq
15
RRBS
8
WGBS
Assay category
23
DNA methylation
18
Transcription
Date released
May, 2022
23
July, 2019
18
September, 2020
Available data
3368
bam
3149
bigWig
1779
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
154
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
19
zippedFastqFolder
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
41
Homo sapiens
Biosample type
27
primary cell
14
tissue
Organ
8
heart
6
epithelium
4
kidney
2
brain
2
musculature of body
2
pancreas
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
limb
1
liver
1
pericardium
Project
23
AMP
18
HPAP
Genome assembly (visualization)
15
hg19
8
GRCh38
Lab
23
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
month_released!
May, 2022
files.file_type!
fastq
BIOSAMPLE
ASSAY
41 results
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single cell RNA-seq
RRBS
WGBS
primary cell
Langerhans cell
18
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 5 more…
tissue
heart left ventricle
1
2
heart right ventricle
2
aorta
1
brain
1
heart
1
+ See 6 more…
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