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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
21
ChIP-seq
9
RRBS
Assay category
27
DNA accessibility
21
DNA binding
9
DNA methylation
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
23
June, 2019
15
August, 2017
8
July, 2019
6
November, 2017
4
October, 2019
1
November, 2020
Available data
610
bigWig
605
bam
409
fastq
292
bed narrowPeak
270
tsv
153
zippedFastqFolder
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
57
Homo sapiens
Biosample type
235
tissue
60
cell line
57
primary cell
1
in vitro differentiated cells
Organ
28
epithelium
13
kidney
13
vasculature
12
brain
8
blood vessel
7
connective tissue
4
heart
4
vein
3
liver
eye
2
musculature of body
Project
57
AMP
Genome assembly (visualization)
50
hg19
44
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
eye
BIOSAMPLE
ASSAY
57 results
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DNase-seq
ChIP-seq
RRBS
primary cell
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
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